Index

A

add_block_subdir() (nsds_lab_to_nwb.common.data_scanners.AuditoryDataScanner method)

add_trials() (nsds_lab_to_nwb.components.stimulus.trials_manager.TrialsManager method) AuditoryDataScanner (class in nsds_lab_to_nwb.common.data_scanners)

B

BaseTokenizer (class in nsds_lab_to_nwb.components.stimulus.tokenizers.base_tokenizer) BehaviorDataScanner (class in nsds_lab_to_nwb.common.data_scanners)

build() (nsds_lab_to_nwb.nwb_builder.NWBBuilder method) byte_order (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFormat attribute)

C

check_stream() (nsds_lab_to_nwb.tools.tdt.tdt_reader.TDTReader method) clear_data() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) common_check() (nsds_lab_to_nwb.metadata.metadata_manager.MetadataReader method)

complete_notes() (nsds_lab_to_nwb.metadata.metadata_manager.LegacyMetadataReader method) (nsds_lab_to_nwb.metadata.metadata_manager.MetadataReader method) csv_to_dict() (in module nsds_lab_to_nwb.common.io)

D

DataScanner (class in nsds_lab_to_nwb.common.data_scanners) Dataset (class in nsds_lab_to_nwb.common.data_scanners)

dtype (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKChannelIterator property) dump_yaml() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method)

E

ElectrodesOriginator (class in nsds_lab_to_nwb.components.electrode.electrodes_originator) EPhysInstrumentData (class in nsds_lab_to_nwb.tools.htk.readers.instrument) EPhysInstrumentLayout (class in nsds_lab_to_nwb.tools.htk.readers.instrument) ExpNoteReader (class in nsds_lab_to_nwb.metadata.exp_note_reader) extra_cleanup() (nsds_lab_to_nwb.metadata.metadata_manager.LegacyMetadataReader method) (nsds_lab_to_nwb.metadata.metadata_manager.MetadataReader method)

extract_dataset() (nsds_lab_to_nwb.common.data_scanners.AuditoryDataScanner method) (nsds_lab_to_nwb.common.data_scanners.BehaviorDataScanner method) (nsds_lab_to_nwb.common.data_scanners.DataScanner method) extract_metadata() (nsds_lab_to_nwb.metadata.metadata_manager.MetadataManager method)

F

from_htk_collection() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKChannelIterator class method)

G

get_anatomy_dict() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) get_anatomy_map() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection static method) get_audio_start_time() (nsds_lab_to_nwb.components.stimulus.trials_manager.TrialsManager method) get_block_index() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) get_channel_index() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) get_current_time() (in module nsds_lab_to_nwb.common.time) get_data() (nsds_lab_to_nwb.tools.htk.htk_reader.HTKReader method) (nsds_lab_to_nwb.tools.tdt.tdt_reader.TDTReader method) get_date_string_only() (in module nsds_lab_to_nwb.common.time) get_default_time() (in module nsds_lab_to_nwb.common.time) get_events() (nsds_lab_to_nwb.tools.tdt.tdt_reader.TDTReader method)

get_layout() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection static method) get_mark_events() (nsds_lab_to_nwb.components.stimulus.mark_manager.MarkManager method) get_mark_track() (nsds_lab_to_nwb.components.stimulus.mark_manager.MarkManager method) get_metadata() (nsds_lab_to_nwb.tools.tdt.tdt_reader.TDTReader method) get_nsds_meta() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) get_number_of_blocks() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) get_number_of_channels_per_block() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) get_number_of_files() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) get_stim_wav() (nsds_lab_to_nwb.components.stimulus.wav_manager.WavManager method) get_streams() (nsds_lab_to_nwb.tools.tdt.tdt_reader.TDTReader method) grid() (nsds_lab_to_nwb.tools.htk.readers.instrument.EPhysInstrumentLayout static method)

H

has_anatomy() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) header (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFormat attribute) header_format() (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFormat class method) header_length (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFormat attribute)

HTKChannelIterator (class in nsds_lab_to_nwb.tools.htk.readers.htkcollection) HTKCollection (class in nsds_lab_to_nwb.tools.htk.readers.htkcollection) HTKFile (class in nsds_lab_to_nwb.tools.htk.readers.htkfile) HTKFormat (class in nsds_lab_to_nwb.tools.htk.readers.htkfile) HTKReader (class in nsds_lab_to_nwb.tools.htk.htk_reader)

I

increase_indent() (nsds_lab_to_nwb.common.io.MyDumper method)

L

LegacyMetadataReader (class in nsds_lab_to_nwb.metadata.metadata_manager) load_metadata_source() (nsds_lab_to_nwb.metadata.metadata_manager.LegacyMetadataReader method) (nsds_lab_to_nwb.metadata.metadata_manager.MetadataReader method)

load_stim_from_wav_file() (nsds_lab_to_nwb.components.stimulus.wav_manager.WavManager method)

M

make() (nsds_lab_to_nwb.components.electrode.electrodes_originator.ElectrodesOriginator method) (nsds_lab_to_nwb.components.neural_data.neural_data_originator.NeuralDataOriginator method) (nsds_lab_to_nwb.components.stimulus.stimulus_originator.StimulusOriginator method) MarkManager (class in nsds_lab_to_nwb.components.stimulus.mark_manager) maxshape (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKChannelIterator property) merge_meta_block() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) MetadataManager (class in nsds_lab_to_nwb.metadata.metadata_manager) MetadataReader (class in nsds_lab_to_nwb.metadata.metadata_manager) module nsds_lab_to_nwb.common.data_scanners nsds_lab_to_nwb.common.io nsds_lab_to_nwb.common.rec_manager nsds_lab_to_nwb.common.time nsds_lab_to_nwb.components.electrode.electrodes_originator nsds_lab_to_nwb.components.neural_data.neural_data_originator nsds_lab_to_nwb.components.stimulus.mark_manager nsds_lab_to_nwb.components.stimulus.stimulus_originator nsds_lab_to_nwb.components.stimulus.tokenizers.base_tokenizer nsds_lab_to_nwb.components.stimulus.tokenizers.single_tokenizer nsds_lab_to_nwb.components.stimulus.tokenizers.timit_tokenizer nsds_lab_to_nwb.components.stimulus.tokenizers.tone_tokenizer nsds_lab_to_nwb.components.stimulus.tokenizers.wn_tokenizer nsds_lab_to_nwb.components.stimulus.trials_manager nsds_lab_to_nwb.components.stimulus.wav_manager nsds_lab_to_nwb.metadata.exp_note_reader nsds_lab_to_nwb.metadata.metadata_manager nsds_lab_to_nwb.nwb_builder nsds_lab_to_nwb.tools.htk.htk_reader nsds_lab_to_nwb.tools.htk.readers.htkcollection nsds_lab_to_nwb.tools.htk.readers.htkfile nsds_lab_to_nwb.tools.htk.readers.instrument nsds_lab_to_nwb.tools.tdt.tdt_reader

MyDumper (class in nsds_lab_to_nwb.common.io)

N

NeuralDataOriginator (class in nsds_lab_to_nwb.components.neural_data.neural_data_originator) nsds_lab_to_nwb.common.data_scanners module nsds_lab_to_nwb.common.io module nsds_lab_to_nwb.common.rec_manager module nsds_lab_to_nwb.common.time module nsds_lab_to_nwb.components.electrode.electrodes_originator module nsds_lab_to_nwb.components.neural_data.neural_data_originator module nsds_lab_to_nwb.components.stimulus.mark_manager module nsds_lab_to_nwb.components.stimulus.stimulus_originator module nsds_lab_to_nwb.components.stimulus.tokenizers.base_tokenizer module nsds_lab_to_nwb.components.stimulus.tokenizers.single_tokenizer module nsds_lab_to_nwb.components.stimulus.tokenizers.timit_tokenizer module nsds_lab_to_nwb.components.stimulus.tokenizers.tone_tokenizer module

nsds_lab_to_nwb.components.stimulus.tokenizers.wn_tokenizer module nsds_lab_to_nwb.components.stimulus.trials_manager module nsds_lab_to_nwb.components.stimulus.wav_manager module nsds_lab_to_nwb.metadata.exp_note_reader module nsds_lab_to_nwb.metadata.metadata_manager module nsds_lab_to_nwb.nwb_builder module nsds_lab_to_nwb.tools.htk.htk_reader module nsds_lab_to_nwb.tools.htk.readers.htkcollection module nsds_lab_to_nwb.tools.htk.readers.htkfile module nsds_lab_to_nwb.tools.htk.readers.instrument module nsds_lab_to_nwb.tools.tdt.tdt_reader module NWBBuilder (class in nsds_lab_to_nwb.nwb_builder)

P

param_kind_base (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFormat attribute) param_kind_encoding (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFormat attribute) parse() (nsds_lab_to_nwb.metadata.metadata_manager.LegacyMetadataReader method) (nsds_lab_to_nwb.metadata.metadata_manager.MetadataReader method)

parse_sheets() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) polytrode() (nsds_lab_to_nwb.tools.htk.readers.instrument.EPhysInstrumentLayout static method) polytrode_position_in_grid() (nsds_lab_to_nwb.tools.htk.readers.instrument.EPhysInstrumentLayout static method)

R

read() (nsds_lab_to_nwb.metadata.metadata_manager.MetadataReader method) read_anatomy() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection static method) read_channel() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) read_csvs() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) read_data() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKCollection method) (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFile method) (nsds_lab_to_nwb.tools.htk.readers.instrument.EPhysInstrumentData method) read_gs() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) read_info() (nsds_lab_to_nwb.common.rec_manager.RecManager method) read_input() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) read_mark_events() (nsds_lab_to_nwb.common.rec_manager.RecManager method)

read_marks() (nsds_lab_to_nwb.common.rec_manager.RecManager method) read_mat_file() (in module nsds_lab_to_nwb.common.io) read_neural_data() (nsds_lab_to_nwb.common.rec_manager.RecManager method) read_ods() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) read_sample() (nsds_lab_to_nwb.tools.htk.readers.htkfile.HTKFile method) read_xlsx() (nsds_lab_to_nwb.metadata.exp_note_reader.ExpNoteReader method) read_yaml() (in module nsds_lab_to_nwb.common.io) RecManager (class in nsds_lab_to_nwb.common.rec_manager) recommended_chunk_shape() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKChannelIterator method) recommended_data_shape() (nsds_lab_to_nwb.tools.htk.readers.htkcollection.HTKChannelIterator method) resample() (nsds_lab_to_nwb.components.neural_data.neural_data_originator.NeuralDataOriginator method)

S

SingleTokenizer (class in nsds_lab_to_nwb.components.stimulus.tokenizers.single_tokenizer)

StimulusOriginator (class in nsds_lab_to_nwb.components.stimulus.stimulus_originator)

T

TDTReader (class in nsds_lab_to_nwb.tools.tdt.tdt_reader) timit_stimulus_values() (in module nsds_lab_to_nwb.components.stimulus.tokenizers.timit_tokenizer) TIMITTokenizer (class in nsds_lab_to_nwb.components.stimulus.tokenizers.timit_tokenizer)

tokenize() (nsds_lab_to_nwb.components.stimulus.tokenizers.base_tokenizer.BaseTokenizer method) tone_stimulus_values() (in module nsds_lab_to_nwb.components.stimulus.tokenizers.tone_tokenizer) ToneTokenizer (class in nsds_lab_to_nwb.components.stimulus.tokenizers.tone_tokenizer) TrialsManager (class in nsds_lab_to_nwb.components.stimulus.trials_manager)

V

validate_time() (in module nsds_lab_to_nwb.common.time)

W

WavManager (class in nsds_lab_to_nwb.components.stimulus.wav_manager) WNTokenizer (class in nsds_lab_to_nwb.components.stimulus.tokenizers.wn_tokenizer)

write() (nsds_lab_to_nwb.nwb_builder.NWBBuilder method) write_yaml() (in module nsds_lab_to_nwb.common.io)